PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G082900.1
Common NameB456_011G082900, LOC105776596
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 186aa    MW: 20936.8 Da    PI: 8.7682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G082900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18555155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        ++++GVr++  +g Wv+eIr+p        +r++lg+f taeeAa+a+++a+  + g
  Gorai.011G082900.1  5 KKFRGVRQRQ-WGTWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAILMSG 55
                        59*****999.**********8.....334*********************987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.77E-34564No hitNo description
PfamPF008472.5E-11653IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-32663IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-20664IPR016177DNA-binding domain
SMARTSM003807.4E-39669IPR001471AP2/ERF domain
PROSITE profilePS5103222.049663IPR001471AP2/ERF domain
PRINTSPR003671.3E-10718IPR001471AP2/ERF domain
PRINTSPR003671.3E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVQSKKFRGV RQRQWGTWVS EIRHPLLKRR VWLGTFETAE EAARAYDEAA ILMSGRSAKT  60
NFPVPKNQTG DENTTTCNAL SSILSEKLRK CCKIPSPPSL TCLRLDTENS HIGVWQRRAG  120
SRSDSCWVMT VELGKKNGEV TETNKMPASD EPITNKMVRQ EVTDNGLNEE EKAALQMIEE  180
LLNRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17267167ATERF1
3gcc_A3e-17267167ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454795.11e-136PREDICTED: ethylene-responsive transcription factor WIN1 isoform X1
SwissprotQ9XI336e-77WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0D2UPQ21e-136A0A0D2UPQ2_G
STRINGGLYMA07G03500.14e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.15e-66ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]